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README.md

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Examples of Pyroed Usage

The files in this directory are as follows:

  • immune_sequence.py: end-to-end example of Pyroed usage using simulated data
  • oed_vs_rand.png: figure generated by plot_tf8_results.ipynb
  • plot_tf8_results.ipynb: notebook for generating plots; companion to rollout_tf8.py
  • rollout_tf8.py: script for doing semi-synthetic experiment involving transcription factor data
  • tf8_demo.ipynb: notebook that demonstrates basic Pyroed usage in the context of transcription factor data