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Installing CDlib

CDlib requires python>=3.8.

To install the latest version of our library, download (or clone) the current project, open a terminal, and run the following commands:

pip install -r requirements.txt
pip install -r requirements_optional.txt # (Optional) This might not work in Windows systems due to C-based dependencies.
pip install .

Alternatively, use pip

pip install cdlib

or conda

conda create -n cdlib python=3.9
conda config --add channels giuliorossetti
conda config --add channels conda-forge
conda install cdlib

You can install the development version directly from the GitHub repository with

pip install git+https://github.com/GiulioRossetti/cdlib.git

Optional Dependencies

PyPi package

The default installation does not include optional dependencies (e.g., graph-tool) to simplify the installation process. If you need them, you can install them manually or run the following command:

pip install 'cdlib[C]'

This option, safe for GNU/Linux users, will install all those optional dependencies that require C code compilation.

pip install 'cdlib[pypi]'

This option will install all those optional dependencies that are not available on conda/conda-forge.

pip install 'cdlib[all]'

This option will install all optional dependencies accessible with the flag C and pypi.

Advanced

Due to strict requirements, installing a subset of optional dependencies is left outside the previous procedures.

graph-tool

CDlib integrates the support for SBM models offered by graph-tool. To install it, refer to the official documentation and install the conda-forge version of the package (or the deb version if in a Unix system).

ASLPAw

Since its 2.1.0 release, ASLPAw relies on gmpy2, whose installation through pip is difficult to automate due to some C dependencies. To address such an issue, test the following recipe:

conda install gmpy2
pip install shuffle_graph>=2.1.0 similarity-index-of-label-graph>=2.0.1 ASLPAw>=2.1.0

If ASLPAw installation fails, please refer to the official gmpy2 repository.

Optional Dependencies (Conda package)

CDlib relies on a few packages unavailable through conda: to install them, please use pip.

pip install pycombo
pip install GraphRicciCurvature
conda install gmpy2
pip install shuffle_graph>=2.1.0 similarity-index-of-label-graph>=2.0.1 ASLPAw>=2.1.0

In case ASLPAw installation fails, please refer to the official gmpy2 repository repository.